Annotation

Protein:	TDP-43
Library ID:	20090724_LUe5
Experiment ID:	1
Replicate:	1
Tissue:	Brain-C25
Condition:
Species:	Hs
FASTQ:	iCLIP_TDP-43_Brain-C25__hu_TGNNN_20090724_LUe5_1.fq.gz [132.3M]

Mapping (251)

Mapped to:	hg19
Annotation version:	ensembl59
Last update:	None

Mapped files

B:	20090724_LUe5_1_hg19_ensembl59_B_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA.bed.gz [582.3K]
Ban:	20090724_LUe5_1_hg19_ensembl59_Ban_iCLIP_TDP-43_Brain-C25_annotated-positions.tab.gz [1.9M]
Bsumbtype:	20090724_LUe5_1_hg19_ensembl59_Bsumbtype_iCLIP_TDP-43_Brain-C25_summary-by-biotype.tab.gz [3.7K]
Bsumgene:	20090724_LUe5_1_hg19_ensembl59_Bsumgene_iCLIP_TDP-43_Brain-C25_summary-by-gene.tab.gz [1.5M]
Bsumsegt:	20090724_LUe5_1_hg19_ensembl59_Bsumsegt_iCLIP_TDP-43_Brain-C25_summary-by-segment.tab.gz [3.6M]
Bsumtype:	20090724_LUe5_1_hg19_ensembl59_Bsumtype_iCLIP_TDP-43_Brain-C25_summary-by-type.tab.gz [1.5K]
Btc:	20090724_LUe5_1_hg19_ensembl59_Btc_iCLIP_TDP-43_Brain-C25_bedGraph-totalcounts.bed.gz [626.9K]
Bunf:	20090724_LUe5_1_hg19_ensembl59_Bunf_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-unfiltered.bed.gz [594.8K]
Bunw:	20090724_LUe5_1_hg19_ensembl59_Bunw_iCLIP_TDP-43_Brain-C25_bedGraph-cDNAunweighted.bed.gz [477.1K]
Bws:	20090724_LUe5_1_hg19_ensembl59_Bws_iCLIP_TDP-43_Brain-C25_bedGraph-cDNAweights.bed.gz [563.5K]
G:	20090724_LUe5_1_hg19_ensembl59_G_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-hits-in-genome.bed.gz [116.3K]
Gan:	20090724_LUe5_1_hg19_ensembl59_Gan_iCLIP_TDP-43_Brain-C25_annotated-positions-hits-in-genome.tab.gz [449.4K]
Gsumbtype:	20090724_LUe5_1_hg19_ensembl59_Gsumbtype_iCLIP_TDP-43_Brain-C25_summary-by-biotype-hits-in-genome.tab.gz [2.7K]
Gsumgene:	20090724_LUe5_1_hg19_ensembl59_Gsumgene_iCLIP_TDP-43_Brain-C25_summary-by-gene-hits-in-genome.tab.gz [955.3K]
Gsumsegt:	20090724_LUe5_1_hg19_ensembl59_Gsumsegt_iCLIP_TDP-43_Brain-C25_summary-by-segment-hits-in-genome.tab.gz [3.1M]
Gsumtype:	20090724_LUe5_1_hg19_ensembl59_Gsumtype_iCLIP_TDP-43_Brain-C25_summary-by-type-hits-in-genome.tab.gz [1.2K]
Gunf:	20090724_LUe5_1_hg19_ensembl59_Gunf_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-unfiltered-hits-in-genome.bed.gz [124.2K]
M:	20090724_LUe5_1_hg19_ensembl59_M_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA.bed.gz [449.6K]
Man:	20090724_LUe5_1_hg19_ensembl59_Man_iCLIP_TDP-43_Brain-C25_annotated-positions.tab.gz [1.4M]
Mreads:	20090724_LUe5_1_hg19_ensembl59_Mreads_iCLIP_TDP-43_Brain-C25_bed.bed.gz [713.1K]
Msumbtype:	20090724_LUe5_1_hg19_ensembl59_Msumbtype_iCLIP_TDP-43_Brain-C25_summary-by-biotype.tab.gz [3.6K]
Msumgene:	20090724_LUe5_1_hg19_ensembl59_Msumgene_iCLIP_TDP-43_Brain-C25_summary-by-gene.tab.gz [1.4M]
Msumsegt:	20090724_LUe5_1_hg19_ensembl59_Msumsegt_iCLIP_TDP-43_Brain-C25_summary-by-segment.tab.gz [3.5M]
Msumtype:	20090724_LUe5_1_hg19_ensembl59_Msumtype_iCLIP_TDP-43_Brain-C25_summary-by-type.tab.gz [1.4K]
Mtc:	20090724_LUe5_1_hg19_ensembl59_Mtc_iCLIP_TDP-43_Brain-C25_bedGraph-totalcounts.bed.gz [471.0K]
Mtcunf:	20090724_LUe5_1_hg19_ensembl59_Mtcunf_iCLIP_TDP-43_Brain-C25_bedGraph-totalcounts-unfiltered.bed.gz [471.6K]
Munf:	20090724_LUe5_1_hg19_ensembl59_Munf_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-unfiltered.bed.gz [454.4K]
Munw:	20090724_LUe5_1_hg19_ensembl59_Munw_iCLIP_TDP-43_Brain-C25_bedGraph-cDNAunweighted.bed.gz [362.0K]
Mws:	20090724_LUe5_1_hg19_ensembl59_Mws_iCLIP_TDP-43_Brain-C25_bedGraph-cDNAweights.bed.gz [435.2K]
S:	20090724_LUe5_1_hg19_ensembl59_S_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA.bed.gz [131.4K]
San:	20090724_LUe5_1_hg19_ensembl59_San_iCLIP_TDP-43_Brain-C25_annotated-positions.tab.gz [503.2K]
Sreads:	20090724_LUe5_1_hg19_ensembl59_Sreads_iCLIP_TDP-43_Brain-C25_bed.bed.gz [323.3K]
Ssumbtype:	20090724_LUe5_1_hg19_ensembl59_Ssumbtype_iCLIP_TDP-43_Brain-C25_summary-by-biotype.tab.gz [2.7K]
Ssumgene:	20090724_LUe5_1_hg19_ensembl59_Ssumgene_iCLIP_TDP-43_Brain-C25_summary-by-gene.tab.gz [974.4K]
Ssumsegt:	20090724_LUe5_1_hg19_ensembl59_Ssumsegt_iCLIP_TDP-43_Brain-C25_summary-by-segment.tab.gz [3.1M]
Ssumtype:	20090724_LUe5_1_hg19_ensembl59_Ssumtype_iCLIP_TDP-43_Brain-C25_summary-by-type.tab.gz [1.2K]
Stc:	20090724_LUe5_1_hg19_ensembl59_Stc_iCLIP_TDP-43_Brain-C25_bedGraph-totalcounts.bed.gz [158.5K]
Stcunf:	20090724_LUe5_1_hg19_ensembl59_Stcunf_iCLIP_TDP-43_Brain-C25_bedGraph-totalcounts-unfiltered.bed.gz [158.4K]
Sunf:	20090724_LUe5_1_hg19_ensembl59_Sunf_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-unfiltered.bed.gz [139.9K]
T:	20090724_LUe5_1_hg19_ensembl59_T_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-hits-in-transcribed-regions.bed.gz [17.2K]
Tan:	20090724_LUe5_1_hg19_ensembl59_Tan_iCLIP_TDP-43_Brain-C25_annotated-positions-hits-in-transcribed-regions.tab.gz [63.8K]
Tsumbtype:	20090724_LUe5_1_hg19_ensembl59_Tsumbtype_iCLIP_TDP-43_Brain-C25_summary-by-biotype-hits-in-transcribed-regions.tab.gz [2.3K]
Tsumgene:	20090724_LUe5_1_hg19_ensembl59_Tsumgene_iCLIP_TDP-43_Brain-C25_summary-by-gene-hits-in-transcribed-regions.tab.gz [789.2K]
Tsumsegt:	20090724_LUe5_1_hg19_ensembl59_Tsumsegt_iCLIP_TDP-43_Brain-C25_summary-by-segment-hits-in-transcribed-regions.tab.gz [3.0M]
Tsumtype:	20090724_LUe5_1_hg19_ensembl59_Tsumtype_iCLIP_TDP-43_Brain-C25_summary-by-type-hits-in-transcribed-regions.tab.gz [1.1K]
Tunf:	20090724_LUe5_1_hg19_ensembl59_Tunf_iCLIP_TDP-43_Brain-C25_bedGraph-cDNA-unfiltered-hits-in-transcribed-regions.bed.gz [17.9K]

Analyses

RNAmaps:	35704 35710 70993
kmers:	35703 35709 45278 45280 70992 72134
peaks:	35702 35708 70991