Annotation

Protein:	TDP-43
Library ID:	20090724_LUjt2
Experiment ID:	1
Replicate:	1
Tissue:	Brain-F24
Condition:
Species:	Hs
FASTQ:	iCLIP_TDP-43_Brain-F24__hu_TGNNN_20090724_LUjt2_1.fq.gz [64.6M]

Mapping (1223)

Mapped to:	hg19
Annotation version:	ensembl59
Last update:	None

Mapped files

B:	20090724_LUjt2_1_hg19_ensembl59_B_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA.bed.gz [1.8M]
Ban:	20090724_LUjt2_1_hg19_ensembl59_Ban_iCLIP_TDP-43_Brain-F24_annotated-positions.tab.gz [5.3M]
Bsumbtype:	20090724_LUjt2_1_hg19_ensembl59_Bsumbtype_iCLIP_TDP-43_Brain-F24_summary-by-biotype.tab.gz [3.8K]
Bsumgene:	20090724_LUjt2_1_hg19_ensembl59_Bsumgene_iCLIP_TDP-43_Brain-F24_summary-by-gene.tab.gz [2.2M]
Bsumsegt:	20090724_LUjt2_1_hg19_ensembl59_Bsumsegt_iCLIP_TDP-43_Brain-F24_summary-by-segment.tab.gz [4.2M]
Bsumtype:	20090724_LUjt2_1_hg19_ensembl59_Bsumtype_iCLIP_TDP-43_Brain-F24_summary-by-type.tab.gz [1.5K]
Btc:	20090724_LUjt2_1_hg19_ensembl59_Btc_iCLIP_TDP-43_Brain-F24_bedGraph-totalcounts.bed.gz [1.9M]
Bunf:	20090724_LUjt2_1_hg19_ensembl59_Bunf_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-unfiltered.bed.gz [1.8M]
Bunw:	20090724_LUjt2_1_hg19_ensembl59_Bunw_iCLIP_TDP-43_Brain-F24_bedGraph-cDNAunweighted.bed.gz [1.5M]
Bws:	20090724_LUjt2_1_hg19_ensembl59_Bws_iCLIP_TDP-43_Brain-F24_bedGraph-cDNAweights.bed.gz [1.7M]
G:	20090724_LUjt2_1_hg19_ensembl59_G_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-hits-in-genome.bed.gz [535.1K]
Gan:	20090724_LUjt2_1_hg19_ensembl59_Gan_iCLIP_TDP-43_Brain-F24_annotated-positions-hits-in-genome.tab.gz [1.7M]
Gsumbtype:	20090724_LUjt2_1_hg19_ensembl59_Gsumbtype_iCLIP_TDP-43_Brain-F24_summary-by-biotype-hits-in-genome.tab.gz [2.8K]
Gsumgene:	20090724_LUjt2_1_hg19_ensembl59_Gsumgene_iCLIP_TDP-43_Brain-F24_summary-by-gene-hits-in-genome.tab.gz [1.2M]
Gsumsegt:	20090724_LUjt2_1_hg19_ensembl59_Gsumsegt_iCLIP_TDP-43_Brain-F24_summary-by-segment-hits-in-genome.tab.gz [3.4M]
Gsumtype:	20090724_LUjt2_1_hg19_ensembl59_Gsumtype_iCLIP_TDP-43_Brain-F24_summary-by-type-hits-in-genome.tab.gz [1.2K]
Gunf:	20090724_LUjt2_1_hg19_ensembl59_Gunf_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-unfiltered-hits-in-genome.bed.gz [538.3K]
M:	20090724_LUjt2_1_hg19_ensembl59_M_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA.bed.gz [1.2M]
Man:	20090724_LUjt2_1_hg19_ensembl59_Man_iCLIP_TDP-43_Brain-F24_annotated-positions.tab.gz [3.6M]
Mreads:	20090724_LUjt2_1_hg19_ensembl59_Mreads_iCLIP_TDP-43_Brain-F24_bed.bed.gz [2.1M]
Msumbtype:	20090724_LUjt2_1_hg19_ensembl59_Msumbtype_iCLIP_TDP-43_Brain-F24_summary-by-biotype.tab.gz [3.7K]
Msumgene:	20090724_LUjt2_1_hg19_ensembl59_Msumgene_iCLIP_TDP-43_Brain-F24_summary-by-gene.tab.gz [1.9M]
Msumsegt:	20090724_LUjt2_1_hg19_ensembl59_Msumsegt_iCLIP_TDP-43_Brain-F24_summary-by-segment.tab.gz [3.9M]
Msumtype:	20090724_LUjt2_1_hg19_ensembl59_Msumtype_iCLIP_TDP-43_Brain-F24_summary-by-type.tab.gz [1.4K]
Mtc:	20090724_LUjt2_1_hg19_ensembl59_Mtc_iCLIP_TDP-43_Brain-F24_bedGraph-totalcounts.bed.gz [1.2M]
Mtcunf:	20090724_LUjt2_1_hg19_ensembl59_Mtcunf_iCLIP_TDP-43_Brain-F24_bedGraph-totalcounts-unfiltered.bed.gz [1.2M]
Munf:	20090724_LUjt2_1_hg19_ensembl59_Munf_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-unfiltered.bed.gz [1.2M]
Munw:	20090724_LUjt2_1_hg19_ensembl59_Munw_iCLIP_TDP-43_Brain-F24_bedGraph-cDNAunweighted.bed.gz [977.4K]
Mws:	20090724_LUjt2_1_hg19_ensembl59_Mws_iCLIP_TDP-43_Brain-F24_bedGraph-cDNAweights.bed.gz [1.1M]
S:	20090724_LUjt2_1_hg19_ensembl59_S_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA.bed.gz [582.7K]
San:	20090724_LUjt2_1_hg19_ensembl59_San_iCLIP_TDP-43_Brain-F24_annotated-positions.tab.gz [1.9M]
Sreads:	20090724_LUjt2_1_hg19_ensembl59_Sreads_iCLIP_TDP-43_Brain-F24_bed.bed.gz [1.0M]
Ssumbtype:	20090724_LUjt2_1_hg19_ensembl59_Ssumbtype_iCLIP_TDP-43_Brain-F24_summary-by-biotype.tab.gz [2.8K]
Ssumgene:	20090724_LUjt2_1_hg19_ensembl59_Ssumgene_iCLIP_TDP-43_Brain-F24_summary-by-gene.tab.gz [1.2M]
Ssumsegt:	20090724_LUjt2_1_hg19_ensembl59_Ssumsegt_iCLIP_TDP-43_Brain-F24_summary-by-segment.tab.gz [3.4M]
Ssumtype:	20090724_LUjt2_1_hg19_ensembl59_Ssumtype_iCLIP_TDP-43_Brain-F24_summary-by-type.tab.gz [1.2K]
Stc:	20090724_LUjt2_1_hg19_ensembl59_Stc_iCLIP_TDP-43_Brain-F24_bedGraph-totalcounts.bed.gz [650.0K]
Stcunf:	20090724_LUjt2_1_hg19_ensembl59_Stcunf_iCLIP_TDP-43_Brain-F24_bedGraph-totalcounts-unfiltered.bed.gz [651.8K]
Sunf:	20090724_LUjt2_1_hg19_ensembl59_Sunf_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-unfiltered.bed.gz [586.5K]
T:	20090724_LUjt2_1_hg19_ensembl59_T_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-hits-in-transcribed-regions.bed.gz [52.5K]
Tan:	20090724_LUjt2_1_hg19_ensembl59_Tan_iCLIP_TDP-43_Brain-F24_annotated-positions-hits-in-transcribed-regions.tab.gz [167.6K]
Tsumbtype:	20090724_LUjt2_1_hg19_ensembl59_Tsumbtype_iCLIP_TDP-43_Brain-F24_summary-by-biotype-hits-in-transcribed-regions.tab.gz [2.4K]
Tsumgene:	20090724_LUjt2_1_hg19_ensembl59_Tsumgene_iCLIP_TDP-43_Brain-F24_summary-by-gene-hits-in-transcribed-regions.tab.gz [836.0K]
Tsumsegt:	20090724_LUjt2_1_hg19_ensembl59_Tsumsegt_iCLIP_TDP-43_Brain-F24_summary-by-segment-hits-in-transcribed-regions.tab.gz [3.0M]
Tsumtype:	20090724_LUjt2_1_hg19_ensembl59_Tsumtype_iCLIP_TDP-43_Brain-F24_summary-by-type-hits-in-transcribed-regions.tab.gz [1.1K]
Tunf:	20090724_LUjt2_1_hg19_ensembl59_Tunf_iCLIP_TDP-43_Brain-F24_bedGraph-cDNA-unfiltered-hits-in-transcribed-regions.bed.gz [53.4K]

Analyses

RNAmaps:	42013 42019 71023
kmers:	42012 42018 47381 47383 71022
peaks:	42011 42017 71021