Annotation

Protein:	TDP-43
Library ID:	20091102_LUjt5
Experiment ID:	8
Replicate:	4
Tissue:	SHSY5Y
Condition:	Low
Species:	Hs
FASTQ:	iCLIP_TDP-43_SHSY5Y_Low_hu_NNCGNNAAA_20091102_LUjt5_8.fq.gz [119.4M]

Mapping (1199)

Mapped to:	hg19
Annotation version:	ensembl59
Last update:	2011-10-17 08:26:54

Mapped files

B:	20091102_LUjt5_8_hg19_ensembl59_B_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA.bed.gz [2.0M]
Ban:	20091102_LUjt5_8_hg19_ensembl59_Ban_iCLIP_TDP-43_SHSY5Y_annotated-positions.tab.gz [6.2M]
Bsumbtype:	20091102_LUjt5_8_hg19_ensembl59_Bsumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype.tab.gz [3.9K]
Bsumgene:	20091102_LUjt5_8_hg19_ensembl59_Bsumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene.tab.gz [2.1M]
Bsumsegt:	20091102_LUjt5_8_hg19_ensembl59_Bsumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment.tab.gz [4.1M]
Bsumtype:	20091102_LUjt5_8_hg19_ensembl59_Bsumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type.tab.gz [1.5K]
Btc:	20091102_LUjt5_8_hg19_ensembl59_Btc_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts.bed.gz [2.2M]
Bunf:	20091102_LUjt5_8_hg19_ensembl59_Bunf_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-unfiltered.bed.gz [2.0M]
Bunw:	20091102_LUjt5_8_hg19_ensembl59_Bunw_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNAunweighted.bed.gz [1.8M]
Bws:	20091102_LUjt5_8_hg19_ensembl59_Bws_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNAweights.bed.gz [2.0M]
C:	20091102_LUjt5_8_hg19_ensembl59_C_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA.bed.gz [380]
Creads:	20091102_LUjt5_8_hg19_ensembl59_Creads_iCLIP_TDP-43_SHSY5Y_bed.bed.gz [346]
Csumbtype:	20091102_LUjt5_8_hg19_ensembl59_Csumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype.tab.gz [1.3K]
Csumgene:	20091102_LUjt5_8_hg19_ensembl59_Csumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene.tab.gz [752.4K]
Csumsegt:	20091102_LUjt5_8_hg19_ensembl59_Csumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment.tab.gz [2.9M]
Csumtype:	20091102_LUjt5_8_hg19_ensembl59_Csumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type.tab.gz [600]
Ctc:	20091102_LUjt5_8_hg19_ensembl59_Ctc_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts.bed.gz [395]
D:	20091102_LUjt5_8_hg19_ensembl59_D_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA.bed.gz [380]
Dreads:	20091102_LUjt5_8_hg19_ensembl59_Dreads_iCLIP_TDP-43_SHSY5Y_bed.bed.gz [346]
Dsumbtype:	20091102_LUjt5_8_hg19_ensembl59_Dsumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype.tab.gz [1.3K]
Dsumgene:	20091102_LUjt5_8_hg19_ensembl59_Dsumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene.tab.gz [752.4K]
Dsumsegt:	20091102_LUjt5_8_hg19_ensembl59_Dsumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment.tab.gz [2.9M]
Dsumtype:	20091102_LUjt5_8_hg19_ensembl59_Dsumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type.tab.gz [600]
Dtc:	20091102_LUjt5_8_hg19_ensembl59_Dtc_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts.bed.gz [395]
Dxdel:	20091102_LUjt5_8_hg19_ensembl59_Dxdel_iCLIP_TDP-43_SHSY5Y_xlink-and-deletions.tab.gz [161]
G:	20091102_LUjt5_8_hg19_ensembl59_G_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-hits-in-genome.bed.gz [997.0K]
Gan:	20091102_LUjt5_8_hg19_ensembl59_Gan_iCLIP_TDP-43_SHSY5Y_annotated-positions-hits-in-genome.tab.gz [3.1M]
Gsumbtype:	20091102_LUjt5_8_hg19_ensembl59_Gsumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype-hits-in-genome.tab.gz [2.7K]
Gsumgene:	20091102_LUjt5_8_hg19_ensembl59_Gsumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene-hits-in-genome.tab.gz [1.2M]
Gsumsegt:	20091102_LUjt5_8_hg19_ensembl59_Gsumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment-hits-in-genome.tab.gz [3.5M]
Gsumtype:	20091102_LUjt5_8_hg19_ensembl59_Gsumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type-hits-in-genome.tab.gz [1.2K]
Gunf:	20091102_LUjt5_8_hg19_ensembl59_Gunf_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-unfiltered-hits-in-genome.bed.gz [1009.2K]
M:	20091102_LUjt5_8_hg19_ensembl59_M_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA.bed.gz [1002.2K]
Man:	20091102_LUjt5_8_hg19_ensembl59_Man_iCLIP_TDP-43_SHSY5Y_annotated-positions.tab.gz [3.1M]
Mreads:	20091102_LUjt5_8_hg19_ensembl59_Mreads_iCLIP_TDP-43_SHSY5Y_bed.bed.gz [1.8M]
Msumbtype:	20091102_LUjt5_8_hg19_ensembl59_Msumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype.tab.gz [3.8K]
Msumgene:	20091102_LUjt5_8_hg19_ensembl59_Msumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene.tab.gz [1.7M]
Msumsegt:	20091102_LUjt5_8_hg19_ensembl59_Msumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment.tab.gz [3.8M]
Msumtype:	20091102_LUjt5_8_hg19_ensembl59_Msumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type.tab.gz [1.5K]
Mtc:	20091102_LUjt5_8_hg19_ensembl59_Mtc_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts.bed.gz [1.0M]
Mtcunf:	20091102_LUjt5_8_hg19_ensembl59_Mtcunf_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts-unfiltered.bed.gz [1.0M]
Munf:	20091102_LUjt5_8_hg19_ensembl59_Munf_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-unfiltered.bed.gz [1004.5K]
Munw:	20091102_LUjt5_8_hg19_ensembl59_Munw_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNAunweighted.bed.gz [801.3K]
Mws:	20091102_LUjt5_8_hg19_ensembl59_Mws_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNAweights.bed.gz [975.8K]
S:	20091102_LUjt5_8_hg19_ensembl59_S_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA.bed.gz [1.0M]
San:	20091102_LUjt5_8_hg19_ensembl59_San_iCLIP_TDP-43_SHSY5Y_annotated-positions.tab.gz [3.2M]
Sreads:	20091102_LUjt5_8_hg19_ensembl59_Sreads_iCLIP_TDP-43_SHSY5Y_bed.bed.gz [2.1M]
Ssumbtype:	20091102_LUjt5_8_hg19_ensembl59_Ssumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype.tab.gz [2.7K]
Ssumgene:	20091102_LUjt5_8_hg19_ensembl59_Ssumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene.tab.gz [1.3M]
Ssumsegt:	20091102_LUjt5_8_hg19_ensembl59_Ssumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment.tab.gz [3.5M]
Ssumtype:	20091102_LUjt5_8_hg19_ensembl59_Ssumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type.tab.gz [1.2K]
Stc:	20091102_LUjt5_8_hg19_ensembl59_Stc_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts.bed.gz [1.2M]
Stcunf:	20091102_LUjt5_8_hg19_ensembl59_Stcunf_iCLIP_TDP-43_SHSY5Y_bedGraph-totalcounts-unfiltered.bed.gz [1.2M]
Sunf:	20091102_LUjt5_8_hg19_ensembl59_Sunf_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-unfiltered.bed.gz [1.0M]
T:	20091102_LUjt5_8_hg19_ensembl59_T_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-hits-in-transcribed-regions.bed.gz [56.0K]
Tan:	20091102_LUjt5_8_hg19_ensembl59_Tan_iCLIP_TDP-43_SHSY5Y_annotated-positions-hits-in-transcribed-regions.tab.gz [217.4K]
Tsumbtype:	20091102_LUjt5_8_hg19_ensembl59_Tsumbtype_iCLIP_TDP-43_SHSY5Y_summary-by-biotype-hits-in-transcribed-regions.tab.gz [2.4K]
Tsumgene:	20091102_LUjt5_8_hg19_ensembl59_Tsumgene_iCLIP_TDP-43_SHSY5Y_summary-by-gene-hits-in-transcribed-regions.tab.gz [869.2K]
Tsumsegt:	20091102_LUjt5_8_hg19_ensembl59_Tsumsegt_iCLIP_TDP-43_SHSY5Y_summary-by-segment-hits-in-transcribed-regions.tab.gz [3.0M]
Tsumtype:	20091102_LUjt5_8_hg19_ensembl59_Tsumtype_iCLIP_TDP-43_SHSY5Y_summary-by-type-hits-in-transcribed-regions.tab.gz [1.1K]
Tunf:	20091102_LUjt5_8_hg19_ensembl59_Tunf_iCLIP_TDP-43_SHSY5Y_bedGraph-cDNA-unfiltered-hits-in-transcribed-regions.bed.gz [56.6K]

Analyses

RNAmaps:	41842 41848 71017
kmers:	41841 41847 47324 47326 71016 72135
peaks:	41840 41846 71015