Annotation
Protein:TDP-43
Library ID:20101125_LUjt8
Experiment ID:1
Replicate:
Tissue:SH-SY5Y
Condition:Total
Species:Hs
FASTQ:iCLIP_TDP-43_SH-SY5Y_Total_Hs_NNNGGTTNN_20101125_LUjt8_1.fq.gz [338.3M]

Mapping (755)
Mapped to:hg19
Annotation version:ensembl59
Last update:None

Mapped files
B:20101125_LUjt8_1_hg19_ensembl59_B_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [3.1M]
Ban:20101125_LUjt8_1_hg19_ensembl59_Ban_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [9.3M]
Bsumbtype:20101125_LUjt8_1_hg19_ensembl59_Bsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [3.9K]
Bsumgene:20101125_LUjt8_1_hg19_ensembl59_Bsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [2.4M]
Bsumsegt:20101125_LUjt8_1_hg19_ensembl59_Bsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [4.4M]
Bsumtype:20101125_LUjt8_1_hg19_ensembl59_Bsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.5K]
Btc:20101125_LUjt8_1_hg19_ensembl59_Btc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [3.5M]
Bunf:20101125_LUjt8_1_hg19_ensembl59_Bunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [3.2M]
Bunw:20101125_LUjt8_1_hg19_ensembl59_Bunw_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAunweighted.bed.gz [2.6M]
Bws:20101125_LUjt8_1_hg19_ensembl59_Bws_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAweights.bed.gz [3.0M]
G:20101125_LUjt8_1_hg19_ensembl59_G_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-hits-in-genome.bed.gz [1013.5K]
Gan:20101125_LUjt8_1_hg19_ensembl59_Gan_iCLIP_TDP-43_SH-SY5Y_annotated-positions-hits-in-genome.tab.gz [3.2M]
Gsumbtype:20101125_LUjt8_1_hg19_ensembl59_Gsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype-hits-in-genome.tab.gz [2.6K]
Gsumgene:20101125_LUjt8_1_hg19_ensembl59_Gsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene-hits-in-genome.tab.gz [1.3M]
Gsumsegt:20101125_LUjt8_1_hg19_ensembl59_Gsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment-hits-in-genome.tab.gz [3.5M]
Gsumtype:20101125_LUjt8_1_hg19_ensembl59_Gsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type-hits-in-genome.tab.gz [1.2K]
Gunf:20101125_LUjt8_1_hg19_ensembl59_Gunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered-hits-in-genome.bed.gz [1.0M]
M:20101125_LUjt8_1_hg19_ensembl59_M_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [2.0M]
Man:20101125_LUjt8_1_hg19_ensembl59_Man_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [6.1M]
Mreads:20101125_LUjt8_1_hg19_ensembl59_Mreads_iCLIP_TDP-43_SH-SY5Y_bed.bed.gz [3.2M]
Msumbtype:20101125_LUjt8_1_hg19_ensembl59_Msumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [3.8K]
Msumgene:20101125_LUjt8_1_hg19_ensembl59_Msumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [2.1M]
Msumsegt:20101125_LUjt8_1_hg19_ensembl59_Msumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [4.1M]
Msumtype:20101125_LUjt8_1_hg19_ensembl59_Msumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.5K]
Mtc:20101125_LUjt8_1_hg19_ensembl59_Mtc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [2.2M]
Mtcunf:20101125_LUjt8_1_hg19_ensembl59_Mtcunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts-unfiltered.bed.gz [2.2M]
Munf:20101125_LUjt8_1_hg19_ensembl59_Munf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [2.0M]
Munw:20101125_LUjt8_1_hg19_ensembl59_Munw_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAunweighted.bed.gz [1.6M]
Mws:20101125_LUjt8_1_hg19_ensembl59_Mws_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAweights.bed.gz [1.9M]
S:20101125_LUjt8_1_hg19_ensembl59_S_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [1.1M]
San:20101125_LUjt8_1_hg19_ensembl59_San_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [3.5M]
Sreads:20101125_LUjt8_1_hg19_ensembl59_Sreads_iCLIP_TDP-43_SH-SY5Y_bed.bed.gz [2.1M]
Ssumbtype:20101125_LUjt8_1_hg19_ensembl59_Ssumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [2.7K]
Ssumgene:20101125_LUjt8_1_hg19_ensembl59_Ssumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [1.3M]
Ssumsegt:20101125_LUjt8_1_hg19_ensembl59_Ssumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.5M]
Ssumtype:20101125_LUjt8_1_hg19_ensembl59_Ssumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.2K]
Stc:20101125_LUjt8_1_hg19_ensembl59_Stc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [1.3M]
Stcunf:20101125_LUjt8_1_hg19_ensembl59_Stcunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts-unfiltered.bed.gz [1.3M]
Sunf:20101125_LUjt8_1_hg19_ensembl59_Sunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [1.1M]
T:20101125_LUjt8_1_hg19_ensembl59_T_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-hits-in-transcribed-regions.bed.gz [118.9K]
Tan:20101125_LUjt8_1_hg19_ensembl59_Tan_iCLIP_TDP-43_SH-SY5Y_annotated-positions-hits-in-transcribed-regions.tab.gz [463.3K]
Tsumbtype:20101125_LUjt8_1_hg19_ensembl59_Tsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype-hits-in-transcribed-regions.tab.gz [2.4K]
Tsumgene:20101125_LUjt8_1_hg19_ensembl59_Tsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene-hits-in-transcribed-regions.tab.gz [961.7K]
Tsumsegt:20101125_LUjt8_1_hg19_ensembl59_Tsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment-hits-in-transcribed-regions.tab.gz [3.1M]
Tsumtype:20101125_LUjt8_1_hg19_ensembl59_Tsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type-hits-in-transcribed-regions.tab.gz [1.1K]
Tunf:20101125_LUjt8_1_hg19_ensembl59_Tunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered-hits-in-transcribed-regions.bed.gz [121.4K]

Analyses
RNAmaps: 52300 52306 70996
compare: 70408
kmers: 52299 52305 56690 56692 70995
peaks: 52298 52304 70994