Annotation

Protein:	TDP-43
Library ID:	20101125_LUjt8
Experiment ID:	2
Replicate:
Tissue:	SH-SY5Y
Condition:	Nuclear
Species:	Hs
FASTQ:	iCLIP_TDP-43_SH-SY5Y_Nuclear_Hs_NNNTTGTNN_20101125_LUjt8_2.fq.gz [24.7M]

Mapping (756)

Mapped to:	hg19
Annotation version:	ensembl59
Last update:	None

Mapped files

B:	20101125_LUjt8_2_hg19_ensembl59_B_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [296.7K]
Ban:	20101125_LUjt8_2_hg19_ensembl59_Ban_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [1.0M]
Bsumbtype:	20101125_LUjt8_2_hg19_ensembl59_Bsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [3.3K]
Bsumgene:	20101125_LUjt8_2_hg19_ensembl59_Bsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [1.2M]
Bsumsegt:	20101125_LUjt8_2_hg19_ensembl59_Bsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.4M]
Bsumtype:	20101125_LUjt8_2_hg19_ensembl59_Bsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.4K]
Btc:	20101125_LUjt8_2_hg19_ensembl59_Btc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [325.9K]
Bunf:	20101125_LUjt8_2_hg19_ensembl59_Bunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [300.0K]
Bunw:	20101125_LUjt8_2_hg19_ensembl59_Bunw_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAunweighted.bed.gz [252.7K]
Bws:	20101125_LUjt8_2_hg19_ensembl59_Bws_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAweights.bed.gz [289.1K]
G:	20101125_LUjt8_2_hg19_ensembl59_G_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-hits-in-genome.bed.gz [93.3K]
Gan:	20101125_LUjt8_2_hg19_ensembl59_Gan_iCLIP_TDP-43_SH-SY5Y_annotated-positions-hits-in-genome.tab.gz [353.0K]
Gsumbtype:	20101125_LUjt8_2_hg19_ensembl59_Gsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype-hits-in-genome.tab.gz [2.4K]
Gsumgene:	20101125_LUjt8_2_hg19_ensembl59_Gsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene-hits-in-genome.tab.gz [899.4K]
Gsumsegt:	20101125_LUjt8_2_hg19_ensembl59_Gsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment-hits-in-genome.tab.gz [3.1M]
Gsumtype:	20101125_LUjt8_2_hg19_ensembl59_Gsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type-hits-in-genome.tab.gz [1.1K]
Gunf:	20101125_LUjt8_2_hg19_ensembl59_Gunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered-hits-in-genome.bed.gz [95.8K]
M:	20101125_LUjt8_2_hg19_ensembl59_M_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [193.2K]
Man:	20101125_LUjt8_2_hg19_ensembl59_Man_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [689.4K]
Mreads:	20101125_LUjt8_2_hg19_ensembl59_Mreads_iCLIP_TDP-43_SH-SY5Y_bed.bed.gz [277.4K]
Msumbtype:	20101125_LUjt8_2_hg19_ensembl59_Msumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [3.2K]
Msumgene:	20101125_LUjt8_2_hg19_ensembl59_Msumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [1.1M]
Msumsegt:	20101125_LUjt8_2_hg19_ensembl59_Msumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.3M]
Msumtype:	20101125_LUjt8_2_hg19_ensembl59_Msumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.4K]
Mtc:	20101125_LUjt8_2_hg19_ensembl59_Mtc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [205.7K]
Mtcunf:	20101125_LUjt8_2_hg19_ensembl59_Mtcunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts-unfiltered.bed.gz [205.7K]
Munf:	20101125_LUjt8_2_hg19_ensembl59_Munf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [194.2K]
Munw:	20101125_LUjt8_2_hg19_ensembl59_Munw_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAunweighted.bed.gz [159.4K]
Mws:	20101125_LUjt8_2_hg19_ensembl59_Mws_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAweights.bed.gz [187.8K]
S:	20101125_LUjt8_2_hg19_ensembl59_S_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [101.7K]
San:	20101125_LUjt8_2_hg19_ensembl59_San_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [385.9K]
Sreads:	20101125_LUjt8_2_hg19_ensembl59_Sreads_iCLIP_TDP-43_SH-SY5Y_bed.bed.gz [180.1K]
Ssumbtype:	20101125_LUjt8_2_hg19_ensembl59_Ssumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [2.4K]
Ssumgene:	20101125_LUjt8_2_hg19_ensembl59_Ssumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [912.6K]
Ssumsegt:	20101125_LUjt8_2_hg19_ensembl59_Ssumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.1M]
Ssumtype:	20101125_LUjt8_2_hg19_ensembl59_Ssumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.1K]
Stc:	20101125_LUjt8_2_hg19_ensembl59_Stc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [120.6K]
Stcunf:	20101125_LUjt8_2_hg19_ensembl59_Stcunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts-unfiltered.bed.gz [120.8K]
Sunf:	20101125_LUjt8_2_hg19_ensembl59_Sunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [104.3K]
T:	20101125_LUjt8_2_hg19_ensembl59_T_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-hits-in-transcribed-regions.bed.gz [10.4K]
Tan:	20101125_LUjt8_2_hg19_ensembl59_Tan_iCLIP_TDP-43_SH-SY5Y_annotated-positions-hits-in-transcribed-regions.tab.gz [42.2K]
Tsumbtype:	20101125_LUjt8_2_hg19_ensembl59_Tsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype-hits-in-transcribed-regions.tab.gz [2.1K]
Tsumgene:	20101125_LUjt8_2_hg19_ensembl59_Tsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene-hits-in-transcribed-regions.tab.gz [784.0K]
Tsumsegt:	20101125_LUjt8_2_hg19_ensembl59_Tsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment-hits-in-transcribed-regions.tab.gz [3.0M]
Tsumtype:	20101125_LUjt8_2_hg19_ensembl59_Tsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type-hits-in-transcribed-regions.tab.gz [1.1K]
Tunf:	20101125_LUjt8_2_hg19_ensembl59_Tunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered-hits-in-transcribed-regions.bed.gz [10.6K]

Analyses

RNAmaps:	52309 52315 70999
kmers:	52308 52314 56693 56695 70998
peaks:	52307 52313 70997