Annotation

Protein:	TDP-43
Library ID:	20101125_LUjt8
Experiment ID:	3
Replicate:
Tissue:	SH-SY5Y
Condition:	Cytoplasmic
Species:	Hs
FASTQ:	iCLIP_TDP-43_SH-SY5Y_Cytoplasmic_Hs_NNNCAATNN_20101125_LUjt8_3.fq.gz [50.9M]

Mapping (757)

Mapped to:	hg19
Annotation version:	ensembl59
Last update:	None

Mapped files

B:	20101125_LUjt8_3_hg19_ensembl59_B_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [364.3K]
Ban:	20101125_LUjt8_3_hg19_ensembl59_Ban_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [1.2M]
Bsumbtype:	20101125_LUjt8_3_hg19_ensembl59_Bsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [3.5K]
Bsumgene:	20101125_LUjt8_3_hg19_ensembl59_Bsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [1.4M]
Bsumsegt:	20101125_LUjt8_3_hg19_ensembl59_Bsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.5M]
Bsumtype:	20101125_LUjt8_3_hg19_ensembl59_Bsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.4K]
Btc:	20101125_LUjt8_3_hg19_ensembl59_Btc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [404.6K]
Bunf:	20101125_LUjt8_3_hg19_ensembl59_Bunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [369.3K]
Bunw:	20101125_LUjt8_3_hg19_ensembl59_Bunw_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAunweighted.bed.gz [313.4K]
Bws:	20101125_LUjt8_3_hg19_ensembl59_Bws_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAweights.bed.gz [354.4K]
G:	20101125_LUjt8_3_hg19_ensembl59_G_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-hits-in-genome.bed.gz [133.0K]
Gan:	20101125_LUjt8_3_hg19_ensembl59_Gan_iCLIP_TDP-43_SH-SY5Y_annotated-positions-hits-in-genome.tab.gz [481.4K]
Gsumbtype:	20101125_LUjt8_3_hg19_ensembl59_Gsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype-hits-in-genome.tab.gz [2.5K]
Gsumgene:	20101125_LUjt8_3_hg19_ensembl59_Gsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene-hits-in-genome.tab.gz [990.6K]
Gsumsegt:	20101125_LUjt8_3_hg19_ensembl59_Gsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment-hits-in-genome.tab.gz [3.2M]
Gsumtype:	20101125_LUjt8_3_hg19_ensembl59_Gsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type-hits-in-genome.tab.gz [1.1K]
Gunf:	20101125_LUjt8_3_hg19_ensembl59_Gunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered-hits-in-genome.bed.gz [136.9K]
M:	20101125_LUjt8_3_hg19_ensembl59_M_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [214.6K]
Man:	20101125_LUjt8_3_hg19_ensembl59_Man_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [769.8K]
Mreads:	20101125_LUjt8_3_hg19_ensembl59_Mreads_iCLIP_TDP-43_SH-SY5Y_bed.bed.gz [356.2K]
Msumbtype:	20101125_LUjt8_3_hg19_ensembl59_Msumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [3.5K]
Msumgene:	20101125_LUjt8_3_hg19_ensembl59_Msumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [1.2M]
Msumsegt:	20101125_LUjt8_3_hg19_ensembl59_Msumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.3M]
Msumtype:	20101125_LUjt8_3_hg19_ensembl59_Msumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.4K]
Mtc:	20101125_LUjt8_3_hg19_ensembl59_Mtc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [229.4K]
Mtcunf:	20101125_LUjt8_3_hg19_ensembl59_Mtcunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts-unfiltered.bed.gz [229.5K]
Munf:	20101125_LUjt8_3_hg19_ensembl59_Munf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [216.2K]
Munw:	20101125_LUjt8_3_hg19_ensembl59_Munw_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAunweighted.bed.gz [177.0K]
Mws:	20101125_LUjt8_3_hg19_ensembl59_Mws_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNAweights.bed.gz [208.1K]
S:	20101125_LUjt8_3_hg19_ensembl59_S_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA.bed.gz [148.4K]
San:	20101125_LUjt8_3_hg19_ensembl59_San_iCLIP_TDP-43_SH-SY5Y_annotated-positions.tab.gz [534.7K]
Sreads:	20101125_LUjt8_3_hg19_ensembl59_Sreads_iCLIP_TDP-43_SH-SY5Y_bed.bed.gz [297.9K]
Ssumbtype:	20101125_LUjt8_3_hg19_ensembl59_Ssumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype.tab.gz [2.6K]
Ssumgene:	20101125_LUjt8_3_hg19_ensembl59_Ssumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene.tab.gz [1012.0K]
Ssumsegt:	20101125_LUjt8_3_hg19_ensembl59_Ssumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment.tab.gz [3.2M]
Ssumtype:	20101125_LUjt8_3_hg19_ensembl59_Ssumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type.tab.gz [1.1K]
Stc:	20101125_LUjt8_3_hg19_ensembl59_Stc_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts.bed.gz [177.1K]
Stcunf:	20101125_LUjt8_3_hg19_ensembl59_Stcunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-totalcounts-unfiltered.bed.gz [177.2K]
Sunf:	20101125_LUjt8_3_hg19_ensembl59_Sunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered.bed.gz [152.6K]
T:	20101125_LUjt8_3_hg19_ensembl59_T_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-hits-in-transcribed-regions.bed.gz [18.6K]
Tan:	20101125_LUjt8_3_hg19_ensembl59_Tan_iCLIP_TDP-43_SH-SY5Y_annotated-positions-hits-in-transcribed-regions.tab.gz [67.6K]
Tsumbtype:	20101125_LUjt8_3_hg19_ensembl59_Tsumbtype_iCLIP_TDP-43_SH-SY5Y_summary-by-biotype-hits-in-transcribed-regions.tab.gz [2.3K]
Tsumgene:	20101125_LUjt8_3_hg19_ensembl59_Tsumgene_iCLIP_TDP-43_SH-SY5Y_summary-by-gene-hits-in-transcribed-regions.tab.gz [798.5K]
Tsumsegt:	20101125_LUjt8_3_hg19_ensembl59_Tsumsegt_iCLIP_TDP-43_SH-SY5Y_summary-by-segment-hits-in-transcribed-regions.tab.gz [3.0M]
Tsumtype:	20101125_LUjt8_3_hg19_ensembl59_Tsumtype_iCLIP_TDP-43_SH-SY5Y_summary-by-type-hits-in-transcribed-regions.tab.gz [1.1K]
Tunf:	20101125_LUjt8_3_hg19_ensembl59_Tunf_iCLIP_TDP-43_SH-SY5Y_bedGraph-cDNA-unfiltered-hits-in-transcribed-regions.bed.gz [18.9K]

Analyses

RNAmaps:	52318 52324 71002
kmers:	52317 52323 56696 56698 71001
peaks:	52316 52322 71000